Detect gene-level ASE in a population for one-condition analysis.
ASE_detection()
Perform gene-level ASE analysis in the population across genes
one_condition_analysis_Gene()
Perform ASE analysis in the population for a given gene
Detect gene-level differential ASE in a population for two-condition analysis.
differential_ASE_detection()
Perform gene-level differential ASE analysis in the population across genes
two_conditions_analysis_Gene()
Perform differential ASE analysis in the population for a given gene
Create graphic for visualization.
plot_ASE()
Boxplot of the estimated SNP-level ASE
plot_ASE_diff()
Boxplot of the estimated SNP-level ASE difference between two conditions
phasing()
Haplotype pseudo alignment
modelFit()
Model Fitting